Our Slider (jar file) implementation and a README (txt file) on how to run it. As described in the paper, we used two protein interaction networks to assess the performance of SLIDER:
- a high-confidence PPI-network of yeast (zip file) determined using tandem-affinity purification followed by a mass-spectrometry consisting of 1,620 proteins and 9,060 interactions ; and
- a human (zip file) network curated from literature which has 8,872 proteins and 14,230 interactions .
We also made use of several simulated networks (zip file).
 S. Collins et al., ”Towards a comprehensive atlas of the physical
interactome of saccharomyces cerevisiae,” Mol Cell Proteomics.,
 T. Prasad et al., “Human Protein Reference Database - 2009
update”, Nucleic Acids Research 37, D767–D772